| Foreword | p. ix |
| Constructing Tools for the Description of Cell Dynamics | |
| Introduction | p. 1 |
| Hydrodynamic theory of active gels | p. 2 |
| Material science aspects | p. 5 |
| Cell motility | p. 9 |
| Cell oscillations | p. 16 |
| Wound healing and cytokinesis | p. 21 |
| Conclusion | p. 28 |
| References | p. 30 |
| A Physical Model of Cellular Symmetry Breaking | |
| Introduction | p. 33 |
| The actin cortex and polarization | p. 34 |
| Build-up and release of tension in actin cortices grown around beads | p. 36 |
| Modeling of actin shell growth and rupture around beads | p. 38 |
| Comparison of symmetry breaking in cells and around beads | p. 40 |
| Symmetry can break from one point or from multiple points | p. 41 |
| Stress-induced polarization in other systems | p. 42 |
| Conclusion | p. 43 |
| References | p. 43 |
| Motor Proteins as Nanomachines: The Roles of Thermal Fluctuations in Generating Force and Motion | |
| The force-generation problem | p. 47 |
| Rectified-diffusion model | p. 49 |
| Flashing-ratchet model | p. 51 |
| Huxley 1957 and powerstroke models | p. 52 |
| Hand-over-hand models | p. 55 |
| Open questions | p. 56 |
| References | p. 57 |
| Fluctuation Relations for Molecular Motors | |
| Introduction | p. 61 |
| Stochastic models of molecular motors | p. 63 |
| Fluctuation relations in models of molecular motors | p. 74 |
| Conclusions | p. 84 |
| References | p. 85 |
| Studies of DNA-Replication at the Single Molecule Level Using Magnetic Tweezers | |
| Introduction | p. 89 |
| Magnetic tweezers | p. 90 |
| How stretching and twisting DNA helps to track replication process | p. 93 |
| Study of the Replisome | p. 98 |
| Characterizing the helicase activity | p. 101 |
| Behaviour of the primosome: coupling activity of the helicase and the primase | p. 107 |
| DNA synthesis | p. 114 |
| Conclusions | p. 118 |
| References | p. 119 |
| Evolution of Biological Complexity | |
| Introduction | p. 123 |
| Volvox and its relatives as model organisms | p. 125 |
| The advection-diffusion problem | p. 127 |
| Allometric scaling of flagella-driven flows | p. 129 |
| Phototactic steering | p. 133 |
| Flagellar synchronization | p. 134 |
| Conclusions | p. 137 |
| References | p. 137 |
| Conscious and Nonconscious Processes: Distinct Forms of Evidence Accumulation? | |
| An experimental strategy for exploring consciousnes | p. 141 |
| How do we measure whether conscious access occurred? | p. 142 |
| Subliminal processing and evidence accumulation models | p. 144 |
| Subliminal perception | p. 145 |
| Subliminal semantic processing | p. 147 |
| Subliminal accumulation of evidence towards a decision | p. 147 |
| Role of instruction and attention in subliminal processing | p. 149 |
| Modulation by instructions | p. 150 |
| Modulation by executive attention | p. 150 |
| Modulation of subliminal priming by temporal attention | p. 150 |
| Modulation by spatial attention | p. 152 |
| Recent evidence for extended subliminal processing | p. 152 |
| Limits to subliminal processing | p. 153 |
| Durable and explicit information maintenance | p. 154 |
| Global access and novel combinations of operations | p. 154 |
| Intentional action | p. 155 |
| Cerebral bases of conscious and nonconscious computations | p. 155 |
| A global workspace model of conscious access | p. 157 |
| Accounting for subliminal processing | p. 160 |
| A distinct state of preconscious processing | p. 161 |
| Conclusion: Conscious access as a solution to von Neumann's problem? | p. 163 |
| References | p. 164 |
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