| Thermodynamics and Fluctuations Far from Equilibrium | |
| Introduction to Part I | p. 3 |
| Some Basic Concepts and Definitions | p. 4 |
| Elementary Thermodynamics and Kinetics | p. 7 |
| References | p. 10 |
| Thermodynamics Far from Equilibrium: Linear and Nonlinear One-Variable Systems | p. 11 |
| Linear One-Variable Systems | p. 11 |
| Nonlinear One-Variable Systems | p. 12 |
| Dissipation | p. 15 |
| Connection of the Thermodynamic Theory with Stochastic Theory | p. 16 |
| Relative Stability of Multiple Stationary Stable States | p. 18 |
| Reactions with Different Stoichiometries | p. 20 |
| References | p. 21 |
| Thermodynamic State Function for Single and Multivariable Systems | p. 23 |
| Introduction | p. 23 |
| Linear Multi-Variable Systems | p. 25 |
| Nonlinear Multi-Variable Systems | p. 29 |
| References | p. 32 |
| Continuation of Deterministic Approach for Multivariable Systems | p. 33 |
| References | p. 39 |
| Thermodynamic and Stochastic Theory of Reaction-Diffusion Systems | p. 41 |
| Reaction-Diffusion Systems with Two Intermediates | p. 44 |
| Linear Reaction Systems | p. 45 |
| Non-Linear Reaction Mechanisms | p. 47 |
| Relative Stability of Two Stable Stationary States of a Reaction-Diffusion System | p. 49 |
| Calculation of Relative Stability in a Two-Variable Example, the Selkov Model | p. 52 |
| References | p. 58 |
| Stability and Relative Stability of Multiple Stationary States Related to Fluctuations | p. 59 |
| References | p. 64 |
| Experiments on Relative Stability in Kinetic Systems with Multiple Stationary States | p. 65 |
| Multi-Variable Systems | p. 65 |
| Single-Variable Systems: Experiments on Optical Bistability | p. 68 |
| References | p. 71 |
| Thermodynamic and Stochastic Theory of Transport Processes | p. 73 |
| Introduction | p. 73 |
| Linear Transport Processes | p. 75 |
| Linear Diffusion | p. 75 |
| Linear Thermal Conduction | p. 77 |
| Linear Viscous Flow | p. 79 |
| Nonlinear One-Variable Transport Processes | p. 82 |
| Coupled Transport Processes: An Approach to Thermodynamics and Fluctuations in Hydrodynamics | p. 83 |
| Lorenz Equations and an Interesting Experiment | p. 83 |
| Rayleigh Scattering in a Fluid in a Temperature Gradient | p. 87 |
| Thermodynamic and Stochastic Theory of Electrical Circuits | p. 87 |
| References | p. 87 |
| Thermodynamic and Stochastic Theory for Non-Ideal Systems | p. 89 |
| Introduction | p. 89 |
| A Simple Example | p. 90 |
| References | p. 93 |
| Electrochemical Experiments in Systems Far from Equilibrium | p. 95 |
| Introduction | p. 95 |
| Measurement of Electrochemical Potentials in Non-Equilibrium Stationary States | p. 95 |
| Kinetic and Thermodynamic Information Derived from Electrochemical Measurements | p. 97 |
| References | p. 100 |
| Theory of Determination of Thermodynamic and Stochastic Potentials from Macroscopic Measurements | p. 101 |
| Introduction | p. 101 |
| Change of Chemical System into Coupled Chemical and Electrochemical System | p. 102 |
| Determination of the Stochastic Potential [phi] in Coupled Chemical and Electrochemical Systems | p. 104 |
| Determination of the Stochastic Potential in Chemical Systems with Imposed Fluxes | p. 105 |
| Suggestions for Experimental Tests of the Master Equation | p. 107 |
| References | p. 108 |
| Dissipation and Efficiency in Autonomous and Externally Forced Reactions, Including Several Biochemical Systems | |
| Dissipation in Irreversible Processes | p. 113 |
| Introduction | p. 113 |
| Exact Solution for Thermal Conduction | p. 113 |
| Newton's Law of Cooling | p. 113 |
| Fourier Equation | p. 114 |
| Exact Solution for Chemical Reactions | p. 116 |
| Invalidity of the Principle of Minimum Entropy Production | p. 118 |
| Invalidity of the 'Principle of Maximum Entropy Production' | p. 119 |
| Editorial | p. 119 |
| References | p. 119 |
| Efficiency of Irreversible Processes | p. 121 |
| Introduction | p. 121 |
| Power and Efficiency of Heat Engines | p. 122 |
| References | p. 129 |
| Finite-Time Thermodynamics | p. 131 |
| Introduction and Background | p. 131 |
| Constructing Generalized Potentials | p. 133 |
| Examples: Systems with Finite Rates of Heat Exchange | p. 134 |
| Some More Realistic Applications: Improving Energy Efficiency by Optimal Control | p. 137 |
| Optimization of a More Realistic System: The Otto Cycle | p. 139 |
| Another Example: Distillation | p. 141 |
| Choices of Objectives and Differences of Extrema | p. 144 |
| References | p. 146 |
| Reduction of Dissipation in Heat Engines by Periodic Changes of External Constraints | p. 147 |
| Introduction | p. 147 |
| A Simple Example | p. 147 |
| Some Calculations and Experiments | p. 152 |
| Calculations | p. 152 |
| Experiments | p. 157 |
| References | p. 158 |
| Dissipation and Efficiency in Biochemical Reactions | p. 159 |
| Introduction | p. 159 |
| An Introduction to Oscillatory Reactions | p. 159 |
| An Oscillatory Reaction with Constant Input of Reactants | p. 163 |
| References | p. 168 |
| Three Applications of Chapter 16 | p. 169 |
| Thermodynamic Efficiency in Pumped Biochemical Reactions | p. 169 |
| Thermodynamic Efficiency of a Proton Pump | p. 172 |
| Experiments on Efficiency in the Forced Oscillatory Horse-Radish Peroxidase Reaction | p. 174 |
| References | p. 179 |
| Stochastic Theory and Fluctuations in Systems Far from Equilibrium, Including Disordered Systems | |
| Fluctuation-Dissipation Relations | p. 183 |
| References | p. 188 |
| Fluctuations in Limit Cycle Oscillators | p. 191 |
| References | p. 195 |
| Disordered Kinetic Systems | p. 197 |
| References | p. 202 |
| Index | p. 205 |
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