PREFACE.
ACKNOWLEDGMENTS.
CONTRIBUTORS.
PART I: GENERAL PROTEOMICS OF MICROORGANISMS/MODEL
ORGANISMS.
1. Holistic Biology of Microorganisms: Genomics,
Transcriptomics, and Proteomics (Valerie Wasinger).
2. Strategies for Measuring Dynamics: The Temporal Component of
Proteomics (Robert J. Beynon and Julie M. Pratt).
3. Quest for Complete Proteome Coverage (C. David
O?Connor, Ian N. Clarke, and Paul Skipp).
4. Proteome of Mycoplasma pneumoniae (Richard Herrmann and
Thomas Ruppert).
5. Proteomics of Archaea (Ricardo Cavicchioli, Amber
Goodchild, and Mark Raftery).
PART II: PROTEOMICS AND CELL PHYSIOLOGY.
6. Elucidation of Mechanisms of Acid Stress in Listeria
monocytogenes by Proteomic Analysis (Luu Phan-Thanh and Lothar
Jansch).
7. Oxidation of Bacterial Proteome in Response to Starvation
(Thomas Nystrom).
8. Tale of Two Metal Reducers: Comparative Proteome Analysis of
Geobacter sulferreducens PCA and Shewanella oneidensis MR-1
(Carol S. Giometti).
9. AMT Tag Approach to Proteomic Characterization of Deinococcus
radiodurans and Shewanella oneidensis (Mary S. Lipton, Margaret
F. Romine, Matthew E. Monroe, Dwayne A. Elias, Ljiljana Pasa-Tolic,
Gordon A. Anderson, David J. Anderson, Jim Fredrickson, Kim K.
Hixson, Christophe Masselon, Heather Mottaz, Nikola Tolic, and
Richard D. Smith).
PART III: PHYSIOLOGICAL PROTEOMICS OF INDUSTRIAL
BACTERIA.
10. Proteomics of Corynebacterium glutamicum: Essential
Industrial Bacterium (Andreas Burkovski).
11. Proteomics of Lactococcus lactis: Phenotypes for a Domestic
Bacterium (Mogens Kilstrup).
12. Proteomic Survey through Secretome of Bacillus subtilis
(Haike Antelmann, Jan Maarten van Dijl, Sierd Bron, and Michael
Hecker).
PART IV: PROTEOMICS OF PATHOGENIC MICROORGANISMS.
13. Analyzing Bacterial Pathogenesis at Level of Proteome
(Phillip Cash).
14. Unraveling Edwardsiella tarda Pathogenesis Using the
Proteomics Approach (P. S. Srinivasa Rao, Yuen Peng Tan, Jun
Zheng, and Ka Yin Leung).
15. Structural Proteomics and Computational Analysis of a Deadly
Pathogen: Combating Mycobacterium tuberculosis from Multiple Fronts
(Michael Strong and Celia W. Goulding).
16. Proteomic Studies of Plant-Pathogenic Oomycetes and Fungi
(Catherine R. Bruce, Pieter van West, and Laura J.
Grenville-Briggs).
17. Candida albicans Biology and Pathogenicity: Insights from
Proteomics (Aida Pitarch, Ce´sar Nombela, and Concha
Gil).
18. Contributions of Proteomics to Diagnosis, Treatment, and
Prevention of Candidiasis (Aida Pitarch, Ce´sar Nombela,
and Concha Gil).
19. Identification of Protein Candidates for Developing
Bacterial Ghost Vaccines against Brucella (Vito G. Delvecchio,
Tim Alefantis, Rodolfo A. Ugalde, Diego Comerci, Maria Ines
Marchesini, Akbar Khan, Werner Lubitz, and Cesar V. Mujer).
20. Genomics and Proteomics in Reverse Vaccines (Guido
Grandi).
PART V: PROTEOME DATABASES, BIOINFORMATICS, AND BIOCHEMICAL
MODELING.
21. Databases and Resources for in silico Proteome Analysis
(Manuela Pruess, Paul Kersey, Tamara Kulikova, and Rolf
Apweiler).
22. Interspecies and Intraspecies Comparison of Microbial
Proteins: Learning about Gene Ancestry, Protein Function, and
Species Life Style (Bernard Labedan and Olivier
Lespinet).
23. Cellular Kinetic Modeling of the Microbial Metabolism
(Igor I. Goryanin, Galina V. Lebedeva, Ekaterina A.
Mogilevskaya, Eugeniy A. Metelkin, and Oleg V. Demin).
INDEX.