| Adaptive Networks | p. 1 |
| Introduction | p. 1 |
| The Interplay Between State and Topology | p. 2 |
| Timescale Separation and Critical Phenomena | p. 3 |
| Self-Organization of Non-trivial Network Topologies | p. 4 |
| Adaptive Networks with Inseparable Timescales | p. 5 |
| In this Book | p. 6 |
| References | p. 8 |
| Real-World Examples of Adaptive Networks | |
| Social Group Dynamics in Networks | p. 11 |
| Introduction | p. 11 |
| Construction of the Networks | p. 13 |
| Finding Communities | p. 15 |
| The Clique Percolation Method | p. 15 |
| Preferential Attachment at the Level of Communities | p. 16 |
| The Static Communities | p. 20 |
| Validating the Communities | p. 22 |
| Evolving Communities | p. 24 |
| Statistical Properties of the Community Dynamics | p. 27 |
| Basic Statistics | p. 27 |
| Stationary and Lifetime | p. 29 |
| Predicting Community Break Up | p. 30 |
| Merging of Communities | p. 32 |
| Conclusion | p. 34 |
| References | p. 35 |
| Time-Dependent Complex Networks: Dynamic Centrality, Dynamic Motifs, and Cycles of Social Interactions | p. 39 |
| Dynamic Centrality in Large-Scale Communication Networks | p. 39 |
| Dynamic Centrality in Spatial Proximity Social Networks | p. 44 |
| Dynamic Network Motifs and Cycles of Social Interaction | p. 46 |
| Summary | p. 48 |
| References | p. 49 |
| Adaptive Biological Networks | p. 51 |
| Introduction | p. 51 |
| Network Development in Mycelial Fungi | p. 52 |
| Predicted Transport Characteristics of the Mycelial Network | p. 54 |
| Comparison Between Predicted Transport and Experimental Transport | p. 58 |
| Oscillations and Pulsatile Transport | p. 58 |
| Network Robustness | p. 61 |
| Simple Networks in the Plasmodial Slime Mould Physarum Polycephalum | p. 61 |
| Universal Features of Biological Networks? | p. 65 |
| References | p. 67 |
| Self-Organization of Adaptive Networks | |
| Self-Organized Criticality and Adaptation in Discrete Dynamical Networks | p. 73 |
| Introduction | p. 73 |
| Dynamics of Random Boolean Networks and Random Threshold Networks | p. 77 |
| Underlying Graph Structure | p. 77 |
| Random Boolean Networks | p. 79 |
| Random Threshold Networks | p. 79 |
| Basic Dynamical Properties of RBNs and RTNs | p. 80 |
| Network Self-Organization from Co-evolution of Dynamics and Topology | p. 83 |
| Activity-Dependent Rewiring | p. 83 |
| Adaptive Thresholds - Time Scale Separation Leads to Complex Topologies | p. 90 |
| Extension to Random Boolean Networks | p. 93 |
| Correlation-Based Rewiring in Neural Networks | p. 96 |
| Summary and Outlook | p. 101 |
| References | p. 103 |
| Self-Organization and Complex Networks | p. 107 |
| Introduction | p. 107 |
| Scale Invariance and Self-Organization | p. 109 |
| Geometric Fractals | p. 109 |
| Self-Organized Criticality | p. 111 |
| Complex Networks | p. 115 |
| Network Properties | p. 115 |
| Network Models | p. 116 |
| A Self-Organized Network Model | p. 122 |
| Motivation | p. 123 |
| Definition | p. 124 |
| Analytical Solution | p. 125 |
| Particular Cases | p. 128 |
| Conclusions | p. 132 |
| References | p. 133 |
| Self-Organization of Network Structure in Coupled-Map Systems | p. 137 |
| Introduction | p. 137 |
| Adaptive Network of Logistic-Map Units | p. 138 |
| Model Formulation | p. 139 |
| Unit Dynamics | p. 140 |
| Connection Dynamics | p. 143 |
| Network Structure | p. 145 |
| Dynamic Networks in the Desynchronized Phase | p. 147 |
| Adaptive Network of Bursting Units | p. 153 |
| Model Formulation | p. 153 |
| Unit Dynamics | p. 154 |
| Connection Dynamics | p. 155 |
| Mechanism of Structure Formation | p. 158 |
| Formation of Hierarchical Network Structure Triggered by External Input | p. 158 |
| Summary and Discussion | p. 160 |
| References | p. 162 |
| Dynamical Optimization and Synchronization in Adaptive Complex Networks | p. 165 |
| Introduction | p. 165 |
| Phase Synchronization in the Kuramoto Model | p. 167 |
| Complete Synchronization and Enhanced Synchronizability in Adaptive Complex Networks | p. 175 |
| Complete Synchronization in Adaptive Complex Networks | p. 175 |
| Enhanced Synchronizability in Adaptive Complex Networks | p. 180 |
| Conclusions | p. 186 |
| References | p. 187 |
| Contact Processes and Epidemiology on Adaptive Networks | |
| Contact Processes and Moment Closure on Adaptive Networks | p. 191 |
| Introduction | p. 191 |
| Opinion Formation - Theme and Variations | p. 193 |
| Continuous Opinions | p. 194 |
| Two-Valued Choice and Irreversible Discord | p. 195 |
| The Influence of Bounded Tolerance | p. 197 |
| Asymmetric Insertion of Influence | p. 199 |
| Other Approaches | p. 201 |
| Epidemic Spreading and Moment Closure | p. 201 |
| The Adaptive SIS Model | p. 202 |
| Other Approaches | p. 206 |
| Summary and Outlook | p. 207 |
| References | p. 208 |
| Noise Induced Dynamics in Adaptive Networks with Applications to Epidemiology | p. 209 |
| Introduction | p. 209 |
| Model | p. 212 |
| Bifurcation Structure | p. 214 |
| Effect of Recovered Class on Fluctuations | p. 216 |
| Delayed Outbreaks | p. 221 |
| Lifetime of the Endemic Steady State | p. 222 |
| Network Geometry | p. 223 |
| Conclusions and Discussion | p. 225 |
| References | p. 226 |
| Social Games on Adaptive Networks | |
| A Dynamic Model of Social Network Formation | p. 231 |
| Introduction | p. 231 |
| Making Friends: A Baseline Model of Uniform Reinforcement | p. 234 |
| Friends I: Asymmetric Weights | p. 234 |
| Friends II: Symmetrized Reinforcement | p. 235 |
| Analysis of Friends I and II | p. 235 |
| Making Enemies | p. 237 |
| The Transfer Model | p. 238 |
| The Resistance Model | p. 239 |
| A Better Model? | p. 240 |
| Perturbations of the Models | p. 240 |
| Discounting the Past | p. 240 |
| Analysis of Discounting the Past | p. 241 |
| Introduction of Noise | p. 242 |
| Noise and Discounting | p. 243 |
| Reinforcement by Games of Nontrivial Strategy | p. 244 |
| Rousseau's Stag Hunt | p. 244 |
| Co-evolution of Structure and Strategy | p. 246 |
| Conclusion | p. 247 |
| References | p. 251 |
| Evolutionary Games in Self-Organizing Populations | p. 253 |
| Evolutionary Game Dynamics | p. 253 |
| Active Linking | p. 254 |
| Linking Dynamics | p. 255 |
| Strategy Dynamics | p. 256 |
| Separation of Timescales | p. 258 |
| Effects of Active Linking | p. 260 |
| Individual Based Linking Dynamics | p. 261 |
| Specification of the Linking Dynamics | p. 261 |
| Numerical Results | p. 263 |
| Graph Structures Under Individual Based Linking Dynamics | p. 264 |
| Discussion | p. 265 |
| References | p. 266 |
| The Diplomat's Dilemma: Maximal Power for Minimal Effort in Social Networks | p. 269 |
| Introduction | p. 269 |
| Definition of the Model | p. 271 |
| Preliminaries | p. 271 |
| Moves | p. 272 |
| Strategies | p. 272 |
| Strategy Updates and Stochastic Rewiring | p. 274 |
| The Entire Algorithm | p. 274 |
| Numerical Results | p. 275 |
| Time Evolution | p. 275 |
| Example Networks | p. 275 |
| Effects of Strategies on the Network Topology | p. 277 |
| Transition Probabilities | p. 282 |
| Dependence on System Size and Noise | p. 283 |
| Discussion | p. 284 |
| References | p. 287 |
| Part V | |
| Graph-Rewriting Automata as a Natural Extension of Cellular Automata | p. 291 |
| Introduction | p. 291 |
| Formulation | p. 292 |
| Rules of Graph-Rewriting Automata | p. 293 |
| Update Procedure | p. 294 |
| Simulation of Graph-Rewriting Automata | p. 295 |
| Examples | p. 296 |
| Rule Design by Hand-Coding | p. 297 |
| Design of Self-replicating Turing Machine | p. 298 |
| Rule Search by Evolutionary Computation | p. 300 |
| Evolutionary Computation | p. 300 |
| Simulation Results | p. 302 |
| Exhaustive Trial | p. 303 |
| Rule Representation | p. 304 |
| Results | p. 304 |
| Conclusions | p. 307 |
| References | p. 308 |
| Generative Network Automata: A Generalized Framework for Modeling Adaptive Network Dynamics Using Graph Rewritings | p. 311 |
| Introduction | p. 311 |
| About Graph Rewriting | p. 313 |
| Definition of GNA | p. 314 |
| Generality of GNA | p. 317 |
| Computational Exploration of Possible Dynamics of Simple Binary-State GNA | p. 317 |
| Assumptions | p. 317 |
| Methods | p. 320 |
| Results | p. 321 |
| Conclusion | p. 329 |
| References | p. 330 |
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