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The Burrows-Wheeler Transform : Data Compression, Suffix Arrays, and Pattern Matching - Donald Adjeroh

The Burrows-Wheeler Transform

Data Compression, Suffix Arrays, and Pattern Matching

By: Donald Adjeroh, Timothy Bell, Amar Mukherjee

Hardcover | 25 July 2008

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The Burrows-Wheeler Transform is a text transformation scheme that has found applications in different aspects of the data explosion problem, from data compression to index structures and search. The BWT belongs to a new class of compression algorithms, distinguished by its ability to perform compression by sorted contexts. More recently, the BWT has also found various applications in addition to text data compression, such as in lossless and lossy image compression, tree-source identification, bioinformatics, machine translation, shape matching, and test data compression.

This book will serve as a reference for seasoned professionals or researchers in the area, while providing a gentle introduction, making it accessible for senior undergraduate students or first year graduate students embarking upon research in compression, pattern matching, full text retrieval, compressed index structures, or other areas related to the BWT.

Key Features

  • Comprehensive resource for information related to different aspects of the Burrows-Wheeler Transform including:
    • Gentle introduction to the BWT
    • History of the development of the BWT
    • Detailed theoretical analysis of algorithmic issues and performance limits
    • Searching on BWT compressed data
    • Hardware architectures for the BWT

  • Explores non-traditional applications of the BWT in areas such as:
    • Bioinformatics
    • Joint source-channel coding
    • Modern information retrieval
    • Machine translation
    • Test data compression for systems-on-chip

  • Teaching materials ideal for classroom use on courses in:
    • Data Compression and Source Coding
    • Modern Information Retrieval
    • Information Science
    • Digital Libraries

Industry Reviews

From the reviews:

"The focus of the book, the Burrows-Wheeler transform (BWT), is an algorithm ... used in data compression and pattern matching. ... A major strength of the book is the clear writing style and the easy-to-follow flow. ... On one hand, a student or faculty will discover theoretical topics related to information theory and pattern recognition. On the other, computational scientists will be attracted to the many applications of the BWT transform. All in all, it is a worthwhile lecture." (Stefan Robila, ACM Computing Reviews, November, 2008)

"This book exposes the reader to many applications of the Burrows-Wheeler Transform ... . This book invites the reader to explore a new topic. ... I can recommend this text to a wide variety of readers. This book is well suited for a researcher ... who seeks to understand the Burrows-Wheeler Transform and its many applications to existing framework of algorithms. ... This would be a wonderful course textbook since its coverage is comprehensive ... . Many computer scientists can gain from reading this book." (Shoshana Neuburger, SIGACT News, Vol. 41 (1), 2010)

Other Editions and Formats

Paperback

Published: 4th November 2010

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