Hypoxia

1. Whole Genome Sequencing-based Discovery of Structural Variants in Glioblastoma Kazimierz O. Wrzeszczynski, Vanessa Felice, Minita Shah, Sadia Rahman, Anne-Katrin Emde, Vaidehi Jobanputra, Mayu Frank, and Robert B. Darnell 2. Whole Genome DNA Methylation Analysis of Human Glioblastoma using Illumina BeadArrays Jonathan Serrano and Matija Snuderl 3. Establishing Primary Human Glioblastoma Adherent Cultures from Operative Specimens Amit D. Gujar, Diane D. Mao, John B. Finlay, and Albert H. Kim 4. Establishing Primary Human Glioblastoma Tumorsphere Cultures from Operative Specimens Joshua Frenster and Dimitris Placantonakis 5. Isolation of GBM Stem Cells with Flow Cytometry Julio Inocencio, Joshua Frenster, and Dimitris Placantonakis 6. Lentiviral Transduction of Primary Human Glioblastoma Cultures Joshua Frenster, Julio Inocencio, and Dimitris Placantonakis 7. Selective Targeting of CD133-expressing Glioblastoma Stem Cells using Lentiviral Vectors N. Sumru Bayin and Dimitris G. Placantonakis 8. Intracellular pH Measurements in Glioblastoma Cells using the pH-sensitive Dye BCECF Nataliya Galifianakis, Dimitris G. Placantonakis, and Mitchell Chesler 9. Induction and Assessment of Hypoxia in Glioblastoma Cells in vitro Jean-Pierre Gagner, Mirna Lechpammer, and David Zagzag 10. Metabolomic Analysis of Glioma Cells Using Nanoflow Liquid Chromatography-tandem Mass Spectrometry Jingjing Deng, Guoan Zhang, and Thomas A. Neubert 11. Sample Preparation for Relative Quantitation of Proteins Using Tandem Mass Tags (TMT) and Mass Spectrometry (MS) Hediye Erdjument-Bromage, Fang-Ke Huang, and Thomas A. Neubert 12. Single-Cell RNA Sequencing of Glioblastoma Cells Rajeev Sen, Igor Dolgalev, N. Sumru Bayin, Adriana Heguy, Aris Tsirigos, and Dimitris G. Placantonakis 13. Evaluation of Radioresponse and Radiosensitizers in Glioblastoma Organotypic Cultures N. Sumru Bayin, Lin Ma, Dimitris Placantonakis, and Mary Helen Barcellos-Hoff 14. Orthotopic Patient-derived Glioblastoma Xenografts in Mice Zhongye Xu, Michael Kader, Rajeev Sen, and Dimitris Placantonakis 15. Bioluminescent In Vivo Imaging of Orthotopic Glioblastoma Xenografts in Mice Joshua Frenster and Dimitris Placantonakis 16. Evaluation of Vascularity, Blood Perfusion, and Oxygen Tension in Tumor Xenografts with Fluorescent Microscopy N. Sumru Bayin and Dimitris G. Placantonakis 17. Probing Glioblastoma Tissue Heterogeneity with Laser Capture Microdissection Jean-Pierre Gagner and David Zagzag 18. Flow Cytometric Identification of Tumor-infiltrating Lymphocytes from Glioblastoma Karolina Woroniecka, Pakawat Chongsathidkiet, Aladine Elsamadicy, Harrison Farber, Xiuyu Cui, and Peter E. Fecci 19. Modeling Glioma with Human Embryonic Stem Cell-derived Neural Lineages Aram S. Modrek, Jod Prado, Devin Bready, Joravar Dhaliwal, Danielle Golub, and Dimitris G. Placantonakis