Hidden Markov Models

1. Introduction to Hidden Markov Models and its Applications in Biology M S Vijayabaskar 2. HMMs in Protein Fold Classification Christos Lampros, Costas Papaloukas, Themis Exarchos, and Dimitrios I. Fotiadis 3. Application of Hidden Markov Models in Biomolecular Simulations Saurabh Shukla, Zahra Shamsi, Alexander S. Moffett, Balaji Selvam, and Diwakar Shukla 4. Predicting Beta Barrel Transmembrane Proteins using HMMs Georgios N. Tsaousis, Stavros J. Hamodrakas , and Pantelis G. Bagos 5. Predicting Alpha Helical Transmembrane Proteins using HMMs Georgios N. Tsaousis, Margarita C. Theodoropoulou, Stavros J. Hamodrakas, and Pantelis G. Bagos 6. Self-Organizing Hidden Markov Model Map (SOHMMM): Biological Sequence Clustering and Cluster Visualization Christos Ferles, William-Scott Beaufort, and Vanessa Ferle 7. Analyzing Single Molecule FRET Trajectories using HMM Kenji Okamoto 8. Modelling ChIP-seq Data using HMMs Veronica Vinciotti 9. Hidden Markov Models in Bioinformatics: SNV Inference from Next Generation Sequence Jiawen Bian and Xiaobo Zhou 10. Computationally Tractable Multivariate HMM in Genome-wide Mapping Studies Hyungwon Choi, Debashis Ghosh, and Zhaohui Qin 11. Hidden Markov Models in Population Genomics Julien Y. Dutheil 12. Differential Gene Expression (DEX) and Alternative Splicing Events (ASE) for Temporal Dynamic Processes using HMMs and Hierarchical Bayesian Modeling Approaches Sunghee Oh and Seongho Song 13. Finding RNA-Protein Interaction Sites using HMM Tao Wang, Jonghyun Yun, Yang Xie, and Guanghua Xiao 14. Automated Estimation of Mouse Social Behaviours Based on a Hidden Markov Model Toshiya Arakawa, Akira Tanave, Aki Takahashi, Satoshi Kakihara, Tsuyoshi Koide, and Takashi Tsuchiya 15. Modeling Movement Primitives with Hidden Markov Models for Robotic and Biomedical Applications Michelle Karg and Dana Kulic