Genome Informatics 2008

An Approach to Transcriptome Analysis of Non-Model Organisms Using Short-Read Sequences (L J Collins et al.); Factoring Local Sequence Composition in Motif Significance Analysis (P Ng & U Keich); A New Model of Multi-Marker Correlation for Genome-Wide Tag SNP Selection (W B Wang & T Jiang); Phenotype Profiling of Single-Gene Deletion Mutants of E. coli Using Biolog Technology (Y Tohsato & H Mori); Improved Algorithms for Enumerating Tree-Like Chemical Graphs with Given Path Frequency (Y Ishida et al.); BSAlign: A Rapid Graph-Based Algorithm for Detecting Ligand-Binding Sites in Protein Structures (Z Aung & J C Tong); Protein Complex Prediction Based on Mutually Exclusive Interactions in Protein Interaction Network (S H Jung et al.); On the Reconstruction of the Mus musculus Genome-Scale Metabolic Network Model (L-E Quek & L Nielsen); Predicting Differences in Gene Regulatory Systems by State Space Models (R Yamaguchi et al.); Exploratory Simulation of Cell Ageing Using Hierarchical Models (M Cvijovic et al.); Inferring Differential Leukocyte Activity from Antibody Microarrays Using a Latent Variable Model (J W K Ho et al.); Assessing and Predicting Protein Interactions Using Both Local and Global Network Topological Metrics (G Liu et al.); Modeling the Evolution of Protein Coding Sequences Sampled from Measurably Evolving Populations (M Goode et al.); A Phylogenomic Approach for Studying Plastid Endosymbiosis (A Moustafa et al.); Cis-Regulatory Element Based Gene Finding: An Application in Arabidopsis thaliana (Y Li et al.); Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-Specific Expression Prediction (A Vandenbon & K Nakai); Improving Gene Expression Cancer Molecular Pattern Discovery Using Nonnegative Principal Component Analysis (X Han); Simulation Analysis for the Effect of Light-Dark Cycle on the Entrainment in Circadian Rhythm (N Mitou et al.).