Methods in Molecular Biology

Part I: Introduction: Bioinformatician's Primers Aidan Budd Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. 2. Diversity of Genome Organization Aidan Budd 3. Probability, Statistics, and Computational ScienceNiko Beerenwinkel and Juliane Siebourg 4. The Essentials of Computational Molecular Evolution Stephane Aris-Brosou and Nicolas Rodrigue Part II: Genomic Data Assembly, Alignment, and Homology Inference 5. Next-Generation Sequencing Technologies and Fragment Assembly Algorithms Heewook Lee and Haixu Tang 6. Gene Prediction Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. Tyler Alioto Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. 7. Alignment Methods: Strategies, Challenges, Benchmarking, and Comparative Overview Ari Loytynoja 8. Whole-Genome Alignment Colin N. Dewey 9. Inferring Orthology and Paralogy Adrian M. Altenho and Christophe Dessimoz 10. Detecting Laterally Transferred Genes Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. Sylvain Glemin and Nicolas Galtier 12. Transposable Elements And Their Identification Wojciech Makalowski, Amit Pande, Valer Gotea, and Izabela Makalowska 13. Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Josefa Gonzalez and Dmitri A. Petrov 14. Detection and Phylogenetic Assessment of Conserved Synteny Derived from Whole Genome Duplications Shigehiro Kuraku and Axel Meyer 15. Analysis of Gene Order Evolution Beyond Single-Copy Genes Nadia El-Mabrouk and David Sankoff 16. Discovering Patterns in Gene Order Laxmi Parida and Niina Haiminen 1. Introduction to Genome Biology: Features, Processes, and Structures Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. Aidan Budd Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. 2. Diversity of Genome Organization Aidan Budd 3. Probability, Statistics, and Computational ScienceNiko Beerenwinkel and Juliane Siebourg 4. The Essentials of Computational Molecular Evolution Stephane Aris-Brosou and Nicolas Rodrigue Part II: Genomic Data Assembly, Alignment, and Homology Inference 5. Next-Generation Sequencing Technologies and Fragment Assembly Algorithms Heewook Lee and Haixu Tang 6. Gene Prediction Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. Tyler Alioto Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. 7. Alignment Methods: Strategies, Challenges, Benchmarking, and Comparative Overview Ari Loytynoja 8. Whole-Genome Alignment Colin N. Dewey 9. Inferring Orthology and Paralogy Adrian M. Altenho and Christophe Dessimoz 10. Detecting Laterally Transferred Genes Rajeev K. Azad and Jeffrey G. Lawrence Part III: Genome Evolution: Insights from Statistical Analyses 11. Sylvain Glemin and Nicolas Galtier 12. Transposable Elements And Their Identification Wojciech Makalowski, Amit Pande, Valer Gotea, and Izabela Makalowska 13. Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Josefa Gonzalez and Dmitri A. Petrov 14. Detection and Phylogenetic Assessment of Conserved Synteny Derived from Whole Genome Duplications Shigehiro Kuraku and Axel Meyer 15. Analysis of Gene Order Evolution Beyond Single-Copy Genes Nadia El-Mabrouk and David Sankoff 16. Discovering Patterns in Gene Order Laxmi Parida and Niina Haiminen