Biointerface Characterization by Advanced IR Spectroscopy

By: C. -M Pradier (Editor), Y. J. Chabal (Editor)

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Hardcover | 2 September 2011 | Edition Number 1

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344 Pages

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24.13 x 16.51 x 2.54

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IR spectroscopy has become without any doubt a key technique to answer questions raised when studying the interaction of proteins or peptides with solid surfaces for a fundamental point of view as well as for technological applications.

Principle, experimental set ups, parameters and interpretation rules of several advanced IR-based techniques; application to biointerface characterisation through the presentation of recent examples, will be given in this book. It will describe how to characterise amino acids, protein or bacterial strain interactions with metal and oxide surfaces, by using infrared spectroscopy, in vacuum, in the air or in an aqueous medium. Results will highlight the performances and perspectives of the technique.

Description of the principles, expermental setups and parameter interpretation, and the theory for several advanced IR-based techniques for interface characterisation

Contains examples which demonstrate the capacity, potential and limits of the IR techniques

Helps finding the most adequate mode of analysis

Contains examples

Contains a glossary by techniques and by keywords

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Non-Fiction Science Biology, Life Sciences Biochemistry Chemistry Analytical Chemistry Spectrum Analysis Engineering & Technology Biochemical Engineering Technology in General Nanotechnology Environmental Science

Industrial Chemistry & Manufacturing Technologies Industrial Chemistry

Preface	p. xi
Contributors	p. xv
RAIRS under ultrahigh vacuum conditions on metal surfaces	p. 1
Short history of RAIRS	p. 1
How does it work - the physical basis of RAIRS	p. 2
Description of apparatus and coupling with a UHV chamber	p. 8
Selected examples. Why is RAIRS so successful for thin films on metal surfaces?	p. 8
CO on pure metal surfaces: the beginning	p. 8
Lysine and tartaric acid on Cu(1 1 0) single crystal surface; glutamic acid on Ag(1 10)	p. 11
Bio-molecules (peptides) adsorbed on metal surfaces, studied by RAIRS	p. 19
Conclusions	p. 24
References	p. 25
PM-1RRAS at liquid interfaces	p. 27
Introduction	p. 27
Principle, Theory And Experimental Setup	p. 28
PM-IRRAS signal	p. 28
Signal modelling: optimum angle of incidence and surface selection rule	p. 29
Optimum angle of incidence	p. 29
Surface selection rule	p. 31
Experimental setup	p. 33
Applications	p. 35
Lipids	p. 35
Bi and multilayers at the air-water interface	p. 37
Peptides/ Interaction peptide-membrane	p. 38
Gramicidin	p. 43
Proteins/Interaction Protein-Membrane	p. 45
Membraneous proteins	p. 45
Other systems	p. 48
DNA/cationic lipids interactions	p. 49
Conclusions	p. 53
References	p. 54
Infrared spectroscopy for characterization of biomolecular interfaces	p. 57
General Considerations for Semiconductor Surfaces	p. 59
Absorption versus dispersion	p. 66
Biological molecules at surfaces: nonspecific binding of fibrinogen on H-terminated silicon surfaces	p. 68
Protein binding on a diamond thin film	p. 70
Influence of substrate material on FTIR spectra	p. 73
Conformational analysis of proteins on surfaces by FTIR	p. 78
Conclusions and Outlook	p. 80
Acknowledgments	p. 80
References	p. 80
Infrared analysis of biomolecule attachment of functionalized silicon surfaces	p. 83
Introduction	p. 83
Silicon surface functionalization	p. 88
Functionalization of silicon oxide surfaces	p. 88
Activation methods for optimal results	p. 90
APS layer formation is highly dependent on atmospheric conditions	p. 92
APS layer formation is highly uncontrolled and unstable in aqueous media	p. 93
Functionalization of oxide-free silicon surfaces	p. 98
Biotinylation	p. 100
Behavior of Biotinylated Surfaces in Different Environments	p. 102
Protein attachment	p. 106
Behavior of the biotinylated surface upon protein adsorption	p. 107
Biotinylation and protein attachment to oxide-free silicon surfaces	p. 107
Conclusions	p. 110
Acknowledgements	p. 112
References	p. 112
Attenuated total reflection infrared (ATR-IR) spectroscopy, modulation excitation spectroscopy (MES), and vibrational circular dichroism (VCD)	p. 115
General Introduction	p. 115
ATR-IR spectroscopy	p. 116
Conclusions	p. 127
MES	p. 128
Conclusions	p. 137
Vibrational Circular Dichroism (VCD)	p. 138
Conclusions	p. 142
Acknowledgment	p. 142
References	p. 142
Synchrotron infrared interface science	p. 145
Introduction	p. 145
Synchrotron infrared Emission	p. 147
Infrared emission in storage rings	p. 148
Synchrotron Infrared Studies in Surface Science	p. 154
Identification of low frequency modes of adsorbed species	p. 155
Vibrational dynamics	p. 156
Synchrotron Infrared Applications in Biology	p. 157
Single cells and tissues studies	p. 157
Spatially resolved biomolecular interface study	p. 159
Perspectives In Synchrotron Infrared for Biointerfaces	p. 162
References	p. 164
IR Spectroscopy for biorecognition and molecular sensing	p. 167
Introduction	p. 168
Surface IR Spectroscopy for The Label-free Detection biorecognition Events	p. 168
The ATR technique	p. 168
The SEIRAs technique	p. 176
The IRRAS and PM-IRRAS techniques	p. 179
Conclusion	p. 187
Transition Metal Carbonyl (TMC) Probes	p. 188
IR spectroscopy of metal carbonyls	p. 188
Detection of biorecognition events by IR spectroscopy with TMC labels	p. 189
Molecular sensing by IR spectroscopy	p. 204
Non TMC probes for molecular sensing and biomolecular interaction studies	p. 208
Conclusion	p. 212
References	p. 213
Advanced infrared glasses for biochemical sensing	p. 217
Introduction	p. 217
Overview	p. 217
Development and historical background of FEWS	p. 219
Instrument description	p. 220
FEWS principle	p. 220
Fiber sensor design	p. 221
IR materials for FEWS	p. 224
Application of FEWS to biosensing	p. 229
Hydrophobic fiber surface for sensing in aqueous environments	p. 229
Monitoring of live cells	p. 231
Monitoring the dynamic of biofilms	p. 233
Perspectives and Conclusions	p. 235
Statistical spectral analysis	p. 235
Biosensing through electrophoretic captureof charged molecules	p. 238
Conclusion	p. 240
Acknowledgments	p. 240
References	p. 240
AFM-IR: photothermal infrared nanospectroscopy	p. 245
Introduction	p. 245
Concept and Technique Description	p. 246
AFM-IR setup description	p. 247
Infrared absorption and spectroscopy	p. 248
Photothermal effect	p. 249
Thermoelasticity	p. 251
AFM-IR formalisation	p. 252
Applications In Microbiology: Bacteria Studies	p. 258
Experimental demonstration on E. coli	p. 259
T5 bacteriophage detection inside E. coli	p. 263
PHB location into Rhodobacter capsulatus	p. 265
Mapping Eukaryotes Using AFM-IR	p. 270
Localization of the endogenous structure by AFMIR	p. 270
Example of the localization of exogenous compounds	p. 271
Conclusion	p. 276
Acknowledgments	p. 276
References	p. 276
Sum frequency generation spectroscopy of biointerfaces	p. 279
Introduction	p. 279
Theoretical background, relevant properties and experimental setups for SFC spectroscopy	p. 283
SFC basics	p. 283
Experimental SFG setups	p. 290
Examples of applications to biological interfaces	p. 295
Lipid mono-and bilayers	p. 296
Peptides and proteins	p. 300
Biosensing	p. 306
Prospects311
Dynamics and kinetics: from fast to ultrafast time resolution	p. 311
Playing with colors and excited states: 2D-IR SFG, DR-SFC	p. 313
SFG microscopy: towards high-resolution imaging of biointerfaces	p. 316
Conclusions	p. 318
References	p. 318
Index	p. 323
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Biointerface Characterization by Advanced IR Spectroscopy

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