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DNA Computing : 9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003, revised Papers - Junghuei Chen

DNA Computing

9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003, revised Papers

By: Junghuei Chen (Editor), John Reif (Editor)

Paperback Published: 18th February 2004
ISBN: 9783540209300
Number Of Pages: 212

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Biomolecular computing is an interdisciplinary ?eld that draws together mol- ular biology, DNA nanotechnology, chemistry, physics, computer science and mathematics. Theannualinternationalmeeting onDNA-based computationhas been an exciting forum where scientists of di?erent backgrounds who share a common interest in biomolecular computing can meet and discuss their latest results. The central goal of this conference is to bring together experimentalists and theoreticians whose insights can calibrate each others' approaches. The 9th Annual International Meeting on DNA Based Computers was held during June 1-4, 2003 in the University of Wisconsin, Madison, USA. The meeting had 106 registered participants from 12 countries around the world. On the ?rst day of the meeting, we had three tutorials: the ?rst was on self-assembly of DNA nano structures which focused on the basic techniques of using designed DNA nano molecules to be self-assembled onto larger structures for computational purposes. This tutorial was given by Hao Yan of Duke U- versity. The second tutorial was given by Chengde Mao of Purdue University in which Dr. Mao presented basic DNA biochemistry that was designed for non experimentalists. The third tutorial was given by Max Garzon of the Univ- sity of Memphis. Dr. Garzon gave a lecture on computational complexity which was tailored for non-computer scientists. The next three days were for invited plenary lectures, and regular oral and poster presentations. Invited plenary l- turesweregivenbyHelenBermanofRutgersUniversity(USA), GiancarloMauri of the University of Milan (Italy), Guenter von Kiedrowski of Ruhr University (Germany), and Sorin Istrail of Celera/Applied Biosystems. Theorganizerssoughtto attractthemostsigni?cantrecentresearchwith the highestimpactonthedevelopmentofthediscipline.

A lab-on-a-chip module for bead separation in DNA-based concept learningp. 1
Parallel translation of DNA clusters by VCSEL array trapping and temperature control with laser illuminationp. 10
Chemical switching and molecular logic in fluorescent-labeled M-DNAp. 19
RCA-based detection methods for resolution refutationp. 32
Word design for molecular computing : a surveyp. 37
Time-varying distributed H systems with parallel computations : the problem is solvedp. 48
Deadlock decidability in partial parallel P systemsp. 55
Languages of DNA based code wordsp. 61
Secondary structure design of multi-state DNA machines based on sequential structure transitionsp. 74
Analyzing secondary structure transition paths of DNA/RNA moleculesp. 86
Self-assembled circuit patternsp. 91
One dimensional boundaries for DNA tile self-assemblyp. 108
Proofreading tile sets : error correction for algorithmic self-assemblyp. 126
A DNA-based memory with in vitro learning and associative recallp. 145
Efficiency and reliability of semantic retrieval in DNA-based memoriesp. 157
Nearest-neighbor thermodynamics of DNA sequences with single bulge loopp. 170
Mathematical considerations in the design of microreactor-based DNA computersp. 180
Towards a re-programmable DNA computerp. 190
In vitro translation-based computationsp. 197
Autonomous biomolecular computer modeled after retroviral replicationp. 203
Biomolecular computing by encoding of regulated phosphorylation-dephosphorylation and logic of kinase-phosphatase in cellsp. 213
Conformational addressing using the hairpin structure of single-strand DNAp. 219
Author indexp. 225
Table of Contents provided by Blackwell. All Rights Reserved.

ISBN: 9783540209300
ISBN-10: 3540209301
Series: Lecture Notes in Computer Science
Audience: Professional
Format: Paperback
Language: English
Number Of Pages: 212
Published: 18th February 2004
Publisher: Springer-Verlag Berlin and Heidelberg Gmbh & Co. Kg
Country of Publication: DE
Dimensions (cm): 23.3 x 15.5  x 1.3
Weight (kg): 0.76